genostack's repositories
AlphaFold3
Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch
biopipen
A set of processes/pipelines for bioinformatics
Building-Data-Driven-Applications-with-LlamaIndex
Building Data-Driven Applications with LlamaIndex, published by Packt
carbon
:black_heart: Create and share beautiful images of your source code
ChimeraX
Source code for molecular graphics program UCSF ChimeraX
CUDASW4
CUDASW++4.0: Ultra-fast GPU-based Smith-Waterman Protein Sequence Database Search
Deneb-Showcase
A collection of advanced dataviz examples using Vega, Vega-Lite, Deneb and Power BI.
E2B
Secure cloud runtime for AI apps & AI agents. Fully open-source.
embedio
A Quarto Extension for Embedding HTML Documents and Presentations
fastRAG
Efficient Retrieval Augmentation and Generation Framework
GeoAB
This is the official repository of paper - GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation (ICML2024)
iSEE
R/shiny interface for interactive visualization of data in SummarizedExperiment objects
jupytext
Jupyter Notebooks as Markdown Documents, Julia, Python or R scripts
katib
Automated Machine Learning on Kubernetes
lida
Automatic Generation of Visualizations and Infographics using Large Language Models
luigi
Luigi is a Python module that helps you build complex pipelines of batch jobs. It handles dependency resolution, workflow management, visualization etc. It also comes with Hadoop support built in.
martian
Language and framework for high performance computational pipelines.
MaxKB
💬 基于 LLM 大语言模型的知识库问答系统。开箱即用，支持快速嵌入到第三方业务系统，1Panel 官方出品。
mercury
Convert Jupyter Notebooks to Web Apps
nifi
Apache NiFi
openscope_databook
OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁🧠🔬🖥️📈
papermill
📚 Parameterize, execute, and analyze notebooks
Perplexica
Perplexica is an AI-powered search engine. It is an Open source alternative to Perplexity AI
presto
Fast Wilcoxon and auROC
quarto-webr-pyodide-demo
Demo repository for creating a Quarto workflow with {quarto-webr} and {quarto-pyodide}
querybook
Querybook is a Big Data Querying UI, combining collocated table metadata and a simple notebook interface.
searxng
SearXNG is a free internet metasearch engine which aggregates results from various search services and databases. Users are neither tracked nor profiled.
tigervnc
High performance, multi-platform VNC client and server