genomicsITER

NanoCLUST

NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads

COVID-19

A public repository of scientific and media resources of SARS-CoV-2 related COVID-19

one-liners

Frequently used commands in Bioinformatics

PFgenetics

Collaborative genetic studies of idiopathic pulmonary fibrosis

NanoRTax

Real-time analysis pipeline for nanopore 16S rRNA data

monkeypox

Monkeypox public repository

benchmarking

Benchmarking of WGS and WES workflows from NGS reference data and reference samples sequenced at ITER

influenza

RSV

HADA

Hereditary Angioedema Database Annotation

BCFtools-cheat-sheet

benchmark-germline-variants-prioritizers

Benchmarking of causal germline variant prioritizers

CMplot

📊 Circular and Rectangular Manhattan Plot

DataHarmonizer

GATK-calling-tests

Statistical tests performed by GATK on the variant calling

GATK-gVCF-header

Description of a typical gVCF

genomicsITER.github.io

Test

idseq-web

Infectious Disease Sequencing Platform

metagenomics_suppmaterial

mitogenomes

NgsRelate

pipeline-resources

Bioinformatics Pipeline and Visualization resources

precisionFDA_NCTR-Indel-Calling-Oncopanel-Sequencing-Data-Challenge

relecov-platform

Hackathon

SEPSIS-genetics

sexQC-for-NGS-data

Sex quality control for Next Generation Sequencing data.

survival-analysis

A repository to deposit Survival Analysis resources, maintained by ITER.

t2t-variants

TDA

A repository of Topological Data Analysis

VCFtools-cheat-sheet