Genomic Mechanisms of Ontogenesis

Genomic Mechanisms of Ontogenesis's repositories

Charm

Charm is a flexible pipeline to simulate chromosomal rearrangements on Hi-C-like data

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3DGenBench

Web service for 3D chromatin structure predictive models comparison

Language:PHPGPL-3.02 10

FastContext

FastQ Nucleotide Context Statistics Calculation

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ExoC

MIT100

.github

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CNTN6-microarray-analyzis

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exoclasma-note

Annotation of genomic variants

Language:PythonGPL-3.0000

labjournal

Laboratory journal of Emil

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pipeline

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PlotBigwigOnBed

Aggregate bigWig signal across specific genomic locations

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benchmark_project

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exoclasma

Process Exo-C Sequencing Data and Annotate Genomic Variants

Language:PythonGPL-3.0000

exoclasma-fastq

Different formats to Illumina-like FastQ

Language:PythonGPL-3.0000

exoclasma-index

Reference Sequence and Capture Intervals Preparation for ExoClasma Suite

Language:PythonGPL-3.0004

exoclasma-jooser

aidenlab/juicer Python implementation, part of ExoClasma Suite

Language:PythonGPL-3.0000

exoclasma-parser

Database Parser for exoclasma-note

Language:PythonGPL-3.0000

exoclasma-pipe

Align & Stats Tool for ExoClasma Suite

Language:PythonGPL-3.0000

juicer1.6_compact

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

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medrepo

Med Repo

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Scissors

Scissors: SNP Discovery in Exo-C Data

Language:PythonGPL-3.0000

Web_3DPredictor

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