Geet Duggal's repositories
public-notes
Just a simple repo to track some of my thoughts without a lot of overhead.
typora-github-dark
A dark version of the typora's github theme
dxda
CLI tool to manage the download of large quantities of files from DNAnexus
test-documentation
Testing out netlify
refdetect
Simple python module for reference file detection on the DNAnexus platform
bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
test_bcbio_cwl
Test workflows, run scripts and data for bcbio Common Workflow Language integration
cwltool
Common Workflow Language reference implementation
SalmonBlogResponse
Response to blog post about Salmon
dxWDL
Workflow Definition Language compiler for DNAnexus platform
cnvkit-dnanexus
DNAnexus app for CNVkit
pfda2dockstore
Export precisionFDA apps to Dockstore
dx-toolkit
DNAnexus platform client libraries
cloudbiolinux
CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
wrap-lines
Wrap-lines package for Atom
ensemble-community
ensemble-community is a small project that provides C and R-project interfaces for community detection with ensemble-based algorithms. These methods are intended to interface with the igraph package.