GCX's repositories
AutoKEGGRec
AutoKEGGRec is an automated tool that creates first draft metabolic network reconstructions of single organisms, community reconstructions based on a list of organisms, and finally a consolidated reconstruction for a list of organisms. All reconstructions are based on data from KEGG.
Language:MATLABGPL-3.0000
cameo
cameo - computer aided metabolic engineering & optimization
Language:PythonApache-2.0000
cobrapy
COBRApy is a package for constraint-based modeling of metabolic networks.
Language:PythonGPL-2.0000
ComputationalGenomicsManual
Robs manual for the computational genomics and bioinformatics class.
Language:HTMLMIT000
ModelSEEDpy
Python package for building and analyzing models using ModelSEED
Language:PythonMIT000
PyFBA
A python implementation of flux balance analysis to model microbial metabolism
Language:PythonMIT000