gchoonoo

aged_mice_covariance

Shiny app: Covariance heatmaps of aged mice weight covariance matrices stratified by strain

Buxco_notebook

Buxco Parsing notebook

Buxco_notebook_plot

Example plots for Buxco Data

DE_array_analysis

expression_scripts

HiveR

An R package for creating and plotting 2D and 3D hive plots.

HNSCC_Annotate_Tumor_Progression

This is the step-by-step workflow for annotating HNSCC tumors as Progressors or NonProgressors based on clinical data from TCGA.

HNSCC_Clinical_Data_Notebook

This is the step-by-step workflow for downloading and parsing TCGA Clinical XML files to a tab-deliminated file.

HNSCC_Notebook

Workflow of light/dark pathways in HNSCC

HNSCC_parse_RNAseq_Notebook

This is the step-by-step workflow for downloading and parsing TCGA RNA-Seq Data to a tab-deliminated file that contains genes as rows and patient IDs as columns (FPKM, FPKM-UQ, and Htseq counts)

SIG

Workflows and code for the Systems Immunogenetics project

Stand_and_Move_at_Work

This is a step-by-step workflow for processing and visualizing Active Pal Data that prompts users to stand and move at work.

systems_immunogenetics

Workflows and code for the Systems Immunogenetics project

WenLin_scs_2023

Single Cell Analysis - Humanized StRG T cells

WNV_cleaning_scripts

Step by Step process for cleaning WNV data (weight, clinical score, phenotypes, and qPCR)