gcerutti

card_suits

A Python script to generate a full deck of playing cards with 8 suits

artificial_tissue

A set of tools to generate virtual tissues with various possible computational representations

astec

Adaptative Segmentation and Tracking of Embryonic Cells (developer version, python code only)

cellcomplex

OpenAlea library implementing data structures and algorithms for the representation and manipulation of cellular complexes.

cgal_meshing

Generate coarse meshes of cell tissue from 3D segmented images using the CGAL library.

draco_stem

OpenAlea library for the reconstruction of 3D meshes from segmented shoot apical meristem (SAM) tissue images : Dual Reconstruction by Adjacency Complex Optimization (DRACO) and SAM Tissue Enhanced Mesh (STEM)

imago_scripts

openalea

Official repository for OpenAlea and OpenAleaLab. Other repos in the openalea organization contain things like the website, documentation, projects, etc.

openalea-components

Openalea components

tissue_nukem_3d

An OpenAlea library for the detection and quantitative data extraction from microscopy images of cell nuclei

plantlab

OpenAleaLab extension "plant"

projet_modelisation

sam_segmentation_curvature

sam_spaghetti

SamMaps

SmartRoot_pipeline

timagetk

3D and 2D Image processing algorithms in Python for tissues

tissue_analysis

An OpenAlea library providing image analysis tools to extract quantitative information from 3D segmented tissue images

tissuelab

villagers_tree

A python package to generate a tree visualization of Villagers cards.