Beast code in Giters

Gavin Ha's starred repositories

Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

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Scripts for analyses in the Griffin manuscript

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A flexible framework for nucleosome profiling of cell-free DNA

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A flexible framework for nucleosome profiling of cell-free DNA

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Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer

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Structural variation and indel detection by local assembly

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Tools for analyzing 10X Genomics data

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Tools for 1D and 2D genomic significance analysis

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Genome-wide reconstruction of complex structural variants

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KRONOS workflow for TITAN pipeline

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Directions and upload scripts for connecting LIMS to Firehose (CTC QC and analysis)

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