gavieira

mitos2_wrapper

Wrapper for MITOS2 annotation tool - generates a .gbk file from plain fasta sequences

curso_programacao

Curso de programação voltado para a análise de dados biológicos

bash_misc

Bash command reference and custom functions

biblioverlap

R-package for pair-wise matching of documents between bibliographic databases

jupyter_notebooks

Code and notes on various topics

python_bioinfo

Several scripts for basic bioinformatics data manipulation

Affiliations

RMarkdown Templates for Managing Academic Affiliations for MS-Word and LaTeX

awk-anti-textbook

learn awk by example

biblioverlap_pipelines

Scripts with complete pipelines for document matching using biblioverlap

bothrops

Code used to generate the alignment comparison tables for the publication "Brazilian Bothrops diporus, in fact a lineage of Bothrops pubescens: Mitogenomic, Venomic and Ontogenetic studies" (Kleiz et al., 2019)

code_snippets

database_coverage_ufrj

Cobertura da produção científica da UFRJ em diferentes databases

dotfiles

My wm-zsh-tmux-vim configuration

ECG

Arquivos/anotações do meu Exame de Conhecimentos Gerais (ECG)

gavieira.github.io

genbank_phylogeny

Using genbank sequences to generate large phylogenies

ggVennDiagram

A 'ggplot2' implement of Venn Diagram.

i3

A tiling window manager

imersao-dados-2-2020

latex_learn

Repo for LaTeX training

mitofree

Automated mitochondrial genome assembly using SRA public data

nnn

n³ The unorthodox terminal file manager - Patched to make Enter exit filter prompt

oa_dashboard

Open Access publications dashboard using OpenAlex data

org_learn

Repo for learning the basics of emac's org mode

projeto_bioestatistica

Repo para o meu projeto da disciplina 'Estatística e Reprodutibilidade em Ciências da Vida'

PythonDataScienceHandbook

Python Data Science Handbook: full text in Jupyter Notebooks

r_learn

Repo for my R programming misadventures

seaborn-data

Data repository for seaborn examples

shiny_tutorial

Learning Shiny

workshop_biblioverlap

Data/code for biblioverlap workshop