gatoravi

mpileup2readcounts

Get per-nucleotide readcounts from samtools mpileup

maury

An R package to detect sample-swaps in Next Generation Sequencing(NGS) data.

arnav

Mutation calling using a site-specific binomial model

fdr

Control the false discovery rate using the Benjamini Hochberg procedure in C++

fisher-exact

The fisher exact test from htslib

GenomicsSpring2017

hedgehog-variability

Notebooks and code used for the hedgehog variability project

MultilevelModeling

My course material from the class

castools

Command line tool for the CAS project

avi-phd-thesis

My PhD dissertation at Washington University in St. Louis

csg-project

Comp stat gen project

genomics

genomics assignments

HumanLinkageAnalysis

Course related material from the human linkage class

java-web-dev-exercises

demos, exercise sets, and studios for java-web-development

java-web-dev-studio7

machine-learning-cheat-sheet

Classical equations and diagrams in machine learning

MPRAnalyze

Analyse enhancer strength based on MPRA experiments.

orbit-report

python_chennai_jul2016

Teaching materials for my Python course

recipes

Food :D

regtools

Tools that integrate DNA-seq and RNA-seq data to help identify mutations that have a regulatory effect.

rnavelo

scMPRA

scstoch

spa-day-starter-code

test-import

treecall

Tree-based joint lineage inference and somatic mutation calling

unix_setup

unix setup files.

wustl-latex-dissertation-template

LaTeX disseration and thesis template for The Graduate School at Washington University in St. Louis.

zero-to-mastery-ml

All course materials for the Zero to Mastery Machine Learning and Data Science course.