gatech-genemark

ProtHint

Protein hint generation pipeline for gene finding in eukaryotic genomes

GeneMark-ETP

GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology

MetaGeneMark-2

MetaGeneMark-2: Improved Gene Prediction in Metagenomes

GeneMark-EP-plus

GeneMark-EP and -EP+: automatic eukaryotic gene prediction supported by spliced aligned proteins

Mgcod

Tool for recognizing genetic codes (incl. multiple genetic codes in phage genomes) and genetic-code-informed annotation of coding regions in prokaryotic sequences

BRAKER2-exp

Experiments for the BRAKER2 project

EukSpecies-BRAKER2

Repository with data of eukaryotic species used in BRAKER2 experiments

GeneMark-EP-ProtHint-exp

Experiments for GeneMark-EP/EP+ and ProtHint projects

GeneMark-ETP-exp

Experiments for the GeneMark-ETP project

MetaGeneMark-2-exp

GeneMark-E-Docs

Documentation site for GeneMark-ES suite

spaln-boundary-scorer

Spaln boundary scorer parses introns, starts, stops and exons from Spaln's alignment output and scores them based on local alignment quality

BRAKER3-exp

EukSpecies-EP

GeneMarkHmmEukaryotic3

GeneMark.hmm eukaryotic algorithm-3 version 3.68.pub

prosplign-intron-scorer

ProSplign intron scorer parses introns from ProSplign's alignment output and scores them based on local alignment quality.

StartLink-exp