gashanjakim's repositories
DS-I_Africa_Repeats_Workshop2024
This is the first iteration of the Human Genome Expansions Analysis workshop.
Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
ViralBioinfLAC2022
The repository for the Viral Genomics and Bioinformatics 2022 course
rstudio-feedstock
A conda-smithy repository for rstudio.
ancient_trichuris
Analysis of ancient and modern Trichuris trichiuria in collaboration with Martin Soe and Peter Nejum
WWPG_2022
Working with Pathogen Genomes 2022
MICB405
Tutorials and project information for MICB405
FastQ-Screen
Detecting contamination in NGS data and multi-species analysis
genomescope2.0
Reference-free profiling of polyploid genomes
handson-ml2
A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.
MachineLearning_notes
Machine learning and deep learning resources
machine_learning_complete
A comprehensive repository containing 30+ notebooks on learning machine learning!
master
A machine learning course using Python, Jupyter Notebooks, and OpenML
wtac_helminths_2019
Repository for data and workshop materials for the WTAC Helminths course for 2019
PythonDataScienceHandbook
Python Data Science Handbook: full text in Jupyter Notebooks
ml-genomics-resources
Machine Learning for Genomics and Therapeutics Resources (Cell Patterns)
bioinformaticsdotca.github.io
Repo for student website
OrthoFinder
Phylogenetic orthology inference for comparative genomics
ml-pitfalls
Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"