garner1

BLISS

Repo for bliss pipeline

nucleAI

Morphological heterogeneity analysis of whole slide images.

aux_scripts

Auxiliary scripts

bin

Bliss

cell2vec

CNV

Pipeline to detect copy number variations

complexity

Profile library complexity

complexity_estimation

Scripts to estimate complexity of a library

Contrastive-Learning-NLP-Papers

Paper List for Contrastive Learning for Natural Language Processing

cutseq

Pipeline for restseq

fastq2cloud

Create a point-cloud representation of a genomic corpus.

gene2vec

genomic representation

geneModel

create gene models

genome_segmentation

Segment the genome using unsupervised entropy-based methods.

genomicNLP

Genomic Natural Language Processing

gpseq-hic

Combining gpseq and hic dataset

graviti

GRAph VIsualization of TIssue sections

iFISH

TDA for fish data

ivisith

SSF project

LungCancerHeterogeneity

qfilter

Filter fastq reads by the quality of specifies bases

readcountLP

Read count language processing

reduced_representation

Study reduced representation of the genome

refgenomeLP

Covered reference genome language processing

rest2doc

Given a list of cutsites produces genomic documents starting at each cutsite

restseq_clustering

Use genome segmentation, word embedding and earth mover distance to cluster data from RESTSEQ genome probing.

signal2graph

Map a univariate signal to a graph

telomeres

Count DSB belonging to telomeric regions

UMI

make consensus reads for data with UMI.

Made-With-ML