Garikoitz Lerma-Usabiaga's repositories
paper-rightMINI
Repeat analyses of the PNAS2018 paper, but in the right hemisphere
ToolboxRegistry
Public Toolbox Configurations for use with ToolboxToolbox
fLoc
Functional localizer experiment used to define category-selective cortical regions
prf2d3d
Comparing 2D and 3D PRF for OHBM
votc-langorth
Scripts for the project votc-langorth
BCBLViennaSoft
Code to synch the same stimuli in Vienna and BCBL
RTP-pipeline
Docker based Gear that runs the Reproducible Tract Profiles (RTP) pipeline
stPRF
A spatiotemporal pRF model to characterize fast neural responses using fMRI
exchange
Flywheel Exchange
RTP-preproc
RTP-preproc runs the mrTrix3 preprocessing pipeline in the diffussion data. It uses FSLs topup when the optional inverted phase encoding files are found, otherwise uses the eddy tool. It performs some other denoising steps, and it can normalize or align to acpc the data
freesurfer_mrtrix_afni_matlab_tools
Several MRI matlab tools for Freesurfer, AFNI and mrtrix to read/write files. To be used with ToolboxToolbox
hcp-annot-vc
Annotation tool and data repository for the Human Connectome Project Visual Cortices
fastbook
The fastai book, published as Jupyter Notebooks
JuliaTutorials
Learn Julia via interactive tutorials!
lmctest
lmctest
MNI_ROIS
Store here ROIs that will be downloaded and converted to individual space by the FS container
dcm2niix
DICOM/PAR-REC conversion to nifti using Rorden's dcm2niix
dmriprep
dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
definingWhiteMatter
code for the Defining WM project
nipype
Workflows and interfaces for neuroimaging packages