GaoxingZheng

gptoolbox

Matlab toolbox for Geometry Processing.

corrplot

A visual exploratory tool on correlation matrix

PySurfer

Cortical neuroimaging visualization in Python

ggseg

Plotting tool for brain atlases, in ggplot

DICTOL

DICTOL - A Dictionary Learning Toolbox in Matlab and Python

neuroparc

subcortex

MediationToolbox

Single-level and multi-level mediation analyses for any kind of data, with bootstrap-based significance testing. Neuroimaging-oriented functions allow for mediation effect parametric mapping (mapping of mediation effects across the brain) and multivariate mediation.

ldsc-corrplot-rg

corrplot of LDSC genetic correlation results

mediator

Causal mediation analysis in R

SEMgraph

Causal Structure Learning and Network Analysis with Structural Equation Modeling.

parcellation-survey-eval

Evaluation code used in the brain parcellation survey "Human brain mapping: A systematic comparison of parcellation methods for the human cerebral cortex".

FAST-IRES

An Electromagnetic Source Imaging Algorithm for Estimating Extended Brain Sources and Large-scale Networks

SAF

Surface-based tracking for short association fibres

EEG_preprocessing

ShinySurfer

Software Tool for the Analysis and Visualization of MRI images of the brain

Masks2Metrics

M2M is a matlab code to compute volume, surface, thickness from 2 manually traced masks (binary data)

plot_atlas

plot fMRI ROIs with different colors

MLReliability

MCADI

Multi-Center Alzheimer Disease Imaging (MCADI)

deepGraphh

phd-research-helpers

Package with many useful helpers used in the frame of PhD research (thesis). It provides utilities for classification, regression, correlation (classical and partial), permutation tests, visualizations, etc.

anatomist-free

3D visualization of neuroimaging objects, C++ part

FamilyPermutationABCD

Multi-level block permutation accounting for family relatedness in the ABCD cohort and whole brain mediation analysis and gene enrichment analysis using Allen Brain

ImagingPred

ImagingPred R package

dynamic-brainstates

TiledAnatomist

Anatomist scripts for TiledViz tool.

CNT_research_tools

CNT-approved research tools

Pattnaik-seizure-severity

Code for "A quantitative tool for seizure severity: diagnostic and therapeutic applications"

Scheid_EC_network_tools

Tools for effective connectivity network generation and analysis