gaow's repositories
SEQLinkage
Collapsed Haplotype Pattern Method for Linkage Analysis of Next-Generation Sequencing Data
fine-mapping
Genetic fine-mapping pipelines using tools from Chicago
neuro-twas
Development code (private repo) for TWAS related multiomic gene-mapping in Alzheimer's disease data
cnv-gene-mapping
Develop methods that leverage copy number variations (CNVs) for gene mapping
rotation-2023
Rotation projects for first year MS research assistants
bioworkflows
In-house computational biology workflows at Columbia Neurology
DENTIST
DENTIST (Detecting Errors iN analyses of summary staTISTics) is a QC tool for summary-data-based analyses.
FaST-LMM
Python version of Factored Spectrally Transformed Linear Mixed Models
flashier
A faster and angrier package for EBMF. In progress.
gtex-pipeline
GTEx & TOPMed data production and analysis pipelines
jupyterlab-sos-feedstock
A conda-smithy repository for jupyterlab-sos.
pandoc-chs
Markdown编辑中文LaTeX文档
plink2R
Read PLINK BED/BIM/FAM files into R
R01-AD-2022-codes
Source codes to reproduce prelim results for my R01 on Alzheimer's disease study in 2022
recipe_staging
Staging repository to build and upload conda packages before their submission to conda-forge and bioconda
sos
SoS workflow system for daily data analysis
statistical-genetics-resources
Resources (software, data, research article) in the field of statistical genetics
xqtl-pipeline
Molecular QTL data analysis pipeline developed for ADSP functional genomic xQTL consortium