Giters
ganlab
/
GALA
Long-reads Gap-free Chromosome-scale Assembler
Geek Repo:
Geek Repo
Github PK Tool:
Github PK Tool
Stargazers:
70
Watchers:
4
Issues:
33
Forks:
17
ganlab/GALA Issues
Can it be installed through Conda
Updated
4 months ago
Comments count
1
Is the input genome contig version or scaffold (Hic) version
Updated
4 months ago
one of the comparison file is empty
Updated
8 months ago
minimap commands in the auto-generated draft_comp.sh file resulting in usage errors
Updated
9 months ago
Comments count
3
how to deal with the ccm results
Updated
a year ago
Comments count
2
How to assemble gap-free chomosome by gala according hifi and ONT data?
Closed
3 years ago
Comments count
4
it si too slow by running 'bwa mem -x ont2d misassembly-free draft long-reads'
Updated
a year ago
TabError: inconsistent use of tabs and spaces in indentation
Updated
2 years ago
Comments count
1
Multithreading option in GALA
Updated
2 years ago
Syntax confusion regarding sequencing_platform
Updated
2 years ago
Comments count
2
The single command mode
Updated
2 years ago
Comments count
3
How many draft assemblies should I need?
Closed
3 years ago
Comments count
1
Possible to maintain haplotypes?
Updated
3 years ago
Comments count
1
strange format of 'draf_comp.sh' generated by comp
Updated
3 years ago
Comments count
1
Parameters for multi-threads?
Closed
3 years ago
Comments count
1
How to get misassembly-free draft
Closed
3 years ago
Comments count
7
Can we replace bwa to minimap2?
Closed
3 years ago
Comments count
1
The amount of data eventually generated
Closed
3 years ago
Comments count
1
How to deal with the same reads’ name?
Closed
3 years ago
Comments count
3
newgenome throws ValueError: invalid literal for int() with base 10
Closed
4 years ago
Comments count
1
how to prepare ref fasta file
Closed
3 years ago
Comments count
3
KeyError: 'contig_2601_awad'
Closed
3 years ago
Comments count
4
Calculation time of bwa step
Closed
4 years ago
Comments count
1
Step-by-Step Mode: newgenome: cut_file error
Closed
4 years ago
Comments count
8
How to run Gala
Closed
4 years ago
Comments count
2
I want to try CHM13 assembly
Closed
4 years ago
Comments count
3
bwa still running but no new output ?
Closed
4 years ago
Comments count
1
Problem ccm
Closed
4 years ago
Comments count
12
CCM output
Closed
4 years ago
Comments count
4
Computational requirements and time
Closed
4 years ago
Comments count
3
Single command error, then issues with individual commands.
Closed
4 years ago
Comments count
23
Py2.7
Closed
4 years ago
Comments count
1
Single Command Mode: `KeyError:...
Closed
4 years ago
Comments count
2