gandallab / NHP_MIA_RNAseq

Code and documentation for NHP_MIA_RNAseq project

Geek Repo:Geek Repo

Github PK Tool:Github PK Tool

NHP_MIA_RNAseq

Macaque Genomes

Genome Builds

ENSG Genome Ensembl Cool asdf
rheMac8 Mmul_8.0.1 86 (oct2016), 87 (dec2016) 1600
rheMac3 centered 12
rheMac2 MMUL 1.0 <= 85 (jul2016) 1

Annotations

Annotation Genome Build Genes Transcripts
ENSG v86 MMUL8 32,100 57,398
centered $12 asdf
MMUL 1.0 <= 85 (jul2016) $1 asdf

Transposon identification

clades table (./tables/TE_clades.csv) pulled from RepBase browser's list of repeat classes, retrieved 1/4/2018

About

Code and documentation for NHP_MIA_RNAseq project


Languages

Language:Shell 79.9%Language:R 20.1%