galicae

bioxsd

a repository for all things bioXSD (The Bioinformatics Lab 2013, TU Munich)

comandos

Advanced visualizations for the comparison of single-cell datasets. Conceived as a SAMap add-on, but does not require it.

tina

tina is no acronym

123D

advent2021

my solutions for Advent of Code 2021

aoc-2022

aoc-2023

comandos-paper

A small paper that describes the code and ideas behind https://github.com/galicae/comandos

Easy_HCR

Automated blasting and easy probe design for Hybridization Chain Reaction v3

GAAS

Genome Assembly and Annotation Service code

gitignore

A collection of useful .gitignore templates

gobi-gotoh

ue300164

2023S 300164-1 Advanced bioinformatic analysis of single-cell data

diopy

The single-cell data IO between R and Python(Python version)

genome_assembly_pipelines

A collection of snakemake scripts to streamline genome annotation

insitu_probe_generator

Generate HCR-style Probe Pairs for mRNA visualization

kabsch

planets

Wolfman and Dracula's planetary lander project

rosalind

RSG

Webpage development for RSG-Germany

SAMap

SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.

scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

scGAE

single-cell graph autoencoder

self-assembling-manifold

The Self-Assembling-Manifold (SAM) algorithm.

UE300149-thomas

wengan

An accurate and ultra-fast hybrid genome assembler

zoombox