galenxing

bioconda-recipes

Conda recipes for the bioconda channel.

deepchem

Deep-learning models for Drug Discovery and Quantum Chemistry

final-nn

Implement a generic neural network class and use it for autoencoding and classifying.

galenxing.github.io

HW1-FAST-AQ-Parser

Building a FAST[AQ] Parser + Building a DNA -> RNA Transcriber

HW2-BFS

HW2 BFS

hw3-clustering

hw4-prim-mst

Implement Prim's algorithm to construct a minimum spanning tree.

HW5-NW

Project 5: Needleman-Wunsch Global Alignment

hw6-hmm-viterbi

Implementation of the Viterbi algorithm, a dynamic program that is a common decoder for Hidden Markov Models (HMMs).

hw7-regression

Implement a logistic regression classifier using gradient descent.

mars

Discovering novel cell types across heterogenous single-cell experiments

object_detection

Combining 2D images and 3D point clouds for improved object detection

papers

RPSLKGame

Rock Paper Scissors Lizard Spock

sandbox

Play time!

scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

scv2-hao-reproducibility

scVI

Deep generative modeling for single-cell transcriptomics

scVI-data

datasets for scVI

SingleCellOpenProblems

Formalizing and benchmarking open problems in single-cell genomics

START-UTOX-ANALYSIS

UTOX ANALYSIS FOR CTN START STUDY

utilities

A collection of scripts for common data management and processing tasks

yoseflab.github.io