A shared database of rules for Total Perspective Vortex used by the usegalaxy.* federation.
| version | url | description |
|---|---|---|
| latest | https://gxy.io/tpv/db-latest.yml | always points to latest version |
| v2 | https://gxy.io/tpv/db-v2.yml | latest stable with minor revisions automatically included (recommended url). Currently an alias for latest, but gives you control over upgrade cycle. |
| v1 | https://gxy.io/tpv/db.yml, https://gxy.io/tpv/db-v1.yml | initial version |
The TPV-Shared-DB v2 has some minor breaking changes.
- Ids for shared rules defined in the db have been prepended with 'tpvdb_' for better insight into provenance. If you're overriding any rules, you will need to adjust any rule ids accordingly. (#86)
- The shared db no longer defines mandatory tags like require docker. All require tags have been replaced with prefer (#87)
- Required docker tags have been dropped for three recetox tools (#85)
Values are evaluated as Python f-strings, this means if you want to reference the number of cores you need to use quoted references like
OMP_NUM_THREADS: "{cores}"
| tag | description |
|---|---|
| upload | for scheduling jobs to a upload worker |
| docker | a Docker configured worker |
| docker-shell-access | the user will get shell access in Docker |
| singularity | a Singularity configured worker |
Dashes are used as separators in tags instead of underscores.