galaxyproject / galaxy-helm

Minimal setup required to run Galaxy under Kubernetes

galaxyproject/galaxy-helm Issues

INSTALLATION FAILED on debian11 due to unbound immediate PersistentVolumeClaims
Closed 2 months ago14
Remove objects read permission
Updated 2 months ago15
CVMFS alien cache name mismatch
Closed 3 months ago1
CNPG for postgres?
Updated 3 months ago2
Cannot delete files/folders in the galaxy database owned by root users
Closed 4 months ago13
Update README for interactive tools
Updated 4 months ago
Update galaxy-cvmfs-csi
Updated 5 months ago1
File permission problems with restricted NFS mounts
Closed 5 months ago
Cannot Download output file from Galaxy
Closed 7 months ago16
tag-and-release job does not checkout latest commits
Closed 7 months ago
Release notes not generated
Closed 7 months ago
Move the probedb.py script
Updated 7 months ago5
Maintenance job should also call maintenance.sh script and others
Closed 7 months ago3
Committer identity unknown
Closed 7 months ago
Error in Galaxy-helm installation
Updated 9 months ago2
Node selectors
Updated 9 months ago
Releases are not being tagged
Closed 9 months ago
Hardcoded job priorityClass prohibits scaling
Closed 9 months ago5
Default galaxy container fails to provide the environment for parse_parameter expression tool
Updated a year ago1
Crashes without Refdata on CVMFS
Closed a year ago1
Occasional issues with sqlite tool cache
Closed a year ago40
galaxy-cvmfscsi-nodeplugin daemonset uses wrong pvc name
Closed a year ago3
Missing converters directory on jobs containers
Closed a year ago7
Update CVMFS CSI
Closed a year ago1
On Helm upgrade, Galaxy default tools don't get updated from a new galaxy container
Closed a year ago4
Requirements not installed before the start of web server
Closed 2 years ago2
S3FS driver: yandex -> ctrox
Closed 2 years ago
Startup time for galaxy web container can take very long
Updated 2 years ago19
Helm delete leaves some remanent behind
Updated 2 years ago5
Database default space allowance gets filled fairly quickly
Updated 2 years ago7
Run out of file locks after an hour of running (around ~100 jobs)
Updated 2 years ago8
Job directories failed to be deleted for failed jobs
Closed 2 years ago8
No space left on device even though NFS and nodes have disk space
Closed 2 years ago4
Galaxy workflow handler seems to have issues in communicating with Rabbit/AMPQ
Updated 2 years ago3
rabbitmq-server fails to start
Closed 2 years ago13
Cannot deploy on on-premise k8s
Updated 2 years ago3
Suggestion about galaxy/ingress.yaml
Closed 2 years ago1
helm install is successful but getting an error on landing page
Closed 2 years ago2
Update cert-manager
Updated 2 years ago
Update NFS
Updated 2 years ago
Galaxy with CVMFS seems to work on newer kubernetes
Updated 3 years ago4
Broken link in the readme
Updated 3 years ago3
Increase ephemeral storage limit in values.yml
Updated 3 years ago
Installs stalls during PG initialization
Closed 3 years ago1
Create a higher user id for galaxy than 101
Updated 3 years ago1
Make galaxy-min issue autobuild
Updated 3 years ago
SVG files not being displayed in the new user Welcome page
Closed 3 years ago4
Demote init jobs to non-root and de-hardcode user 101
Updated 3 years ago
create_db.sh throws exception with a seperate postgresql install
Closed 3 years ago2
galaxy init mount jobs never reach completion when run a second time with persistence enabled
Closed 3 years ago14