The Workflow4Metabolomics, W4M in short, is a French infrastructure offering software tool processing, analyzing and annotating metabolomics data. It is based on the Galaxy platform.
A Tool for automated Optimization of XCMS Parameters
Maintainer: Gunnar Libiseller
Citation:
Gunnar Libiseller, Michaela Dvorzak, Ulrike Kleb, Edgar Gander, Tobias Eisenberg, Frank Madeo, Steffen Neumann, Gert Trausinger, Frank Sinner, Thomas Pieber and Christoph Magnes. IPO: a tool for automated optimization of XCMS parameters. BMC Bioinformatics 16 (2015): 118. doi:10.1186/s12859-015-0562-8.
Homepage: https://github.com/glibiseller/IPO
Galaxy is an open, web-based platform for data intensive biomedical research. Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses.
Homepage: https://galaxyproject.org/
Conda is package manager that among many other things can be used to manage Python packages.
#To install miniconda2
#http://conda.pydata.org/miniconda.html
#To install the IPO R library using conda:
conda install r-ipo r-batch
#To set an environment:
conda create -n r-ipo r-ipo r-batch
#To activate the environment:
. activate r-ipo
Test and Deploy with Confidence. Easily sync your GitHub projects with Travis CI and you'll be testing your code in minutes!
- Gildas Le Corguillé @lecorguille - ABiMS / IFB - UPMC/CNRS - Station Biologique de Roscoff - France
- Yann Guitton @yguitton - LABERCA - Laboratory of Food Contaminants and Residue Analysis - Ecole Nationale Vétérinaire, Agroalimentaire et de l'Alimentation Nantes-Atlantique - France