gaarangoa

deeparg

A deep learning based approach to predict Antibiotic Resistance Genes (ARGs) from metagenomes. It provides two models,deepARG-SS and deepARG-LS.

deeparg2.0

deepARG using deep semantic representation

ARGminer

Curation of Antibiotic Resistance Genes by using crowdsourcing

ExtrARG

Extract discriminatory ARGs from metagenomics samples

MetaStorm

MetaStorm: A public webservice for the analysis and annotation of short sequence reads metagenomes

pytorch-pretrained-BERT

📖The Big-&-Extending-Repository-of-Transformers: Pretrained PyTorch models for Google's BERT, OpenAI GPT & GPT-2, Google/CMU Transformer-XL.

transformer_classifier

Transfomer encoder architecture used only for classification.

nanoARG

antibiotic resistance profiling of nanopore reads

deepContigMerger

deepspeech.pytorch

Speech Recognition using DeepSpeech2.

embedding-projector-standalone

fastText

Library for fast text representation and classification.

genomic-scripts

This repository contains simple scripts for genomics/metagenomics data analysis

GRiD

Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at ultra-low sequencing coverage (> 0.2x).

heading_generator

generate news-like headings from tweets using seq2seq

igv

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

LSTMSen

This repository contains a sentiment analysis model predictor using LSTM networks

metaMLP

MetaMLP is a fast approach to annotate metagenomic datasets against a protein reference database

ml

MOD

Multiple Object Detection with tensorflow

model_search

PBintegrall

pyStarSpace

Python wrapper for StarSpace

pytorch-chatbot

Pytorch seq2seq chatbot

samecode

Code that I use all the time everywhere

tensorboard

TensorFlow's Visualization Toolkit

tfjs-examples

Examples built with TensorFlow.js

tfjs-models

Pretrained models for TensorFlow.js

tfjs-yolo-tiny

In-Browser Object Detection using Tiny YOLO on Tensorflow.js

viralMetagenomics