Use the following commands to set up the environment:
docker-compose up -d --build
docker exec -it kaggle bash
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Data Preparation: Place competition data in the
inputdirectory. -
Base Pair Matrix (EternaFold): Generate a base pair matrix using EternaFold. For this step, use scripts provided by my teammate tattaka.
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Training: Run the following scripts to train the models.
cd src/exp112 && sh train.sh cd src/exp300 && sh train.sh cd src/exp302 && sh train.sh cd src/exp312 && sh train.sh cd src/exp317 && sh train.sh
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Ensemble: Generate out-of-fold (oof) predictions and submissions using all 12 models from our team. Then, execute the ensemble script:
python src/scripts/ensemble.py
MIT