futianfan / mimic_text

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baseline MIMIC text ICD-code

the data-processing part rely heavily on CAML-MIMIC

original input:

data

| D_ICD_DIAGNOSES.csv

| D_ICD_PROCEDURES.csv

└───mimic3/

| | NOTEEVENTS.csv

| | DIAGNOSES_ICD.csv

| | PROCEDURES_ICD.csv

| | *_hadm_ids.csv

====source code==== src/ data_reader.py model.py configuration.py train.py

config -> data -> model -> train -> 

====How to run===== ./run.sh

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