furkankurtoglu

CRC-Organoids-Multiscale-Model

PC_python_Fury

CRC-Well

This is a repo for CRC-CAF communication model

PhysiCell-Intracellular-Models

This repo is created for the PhysiCell-Intracellular Paper. The four different approach and their models can be found in here.

PhysiCell-SBML-trials

This repo is dedicated to for PhysiCell-SBML integration. (Be aware weird values around here!)

2D-Well-FBA

whole-well

This repo is dedicated to the "whole-well" paper.

Biofilm-Project

This is a class project in Multi-Cellular Systems Biology Course that aims to model two-species biofilm with agent-based modeling approach using PhysiCell.

CRC-FBA-trials

CRC-Organoid

CRC_Archive

This repo is an archive for CRC-models. It includes old codes or versions of PhysiCell

cycle-training

Cycle_Advancing_Example

Death-Models-Training

Death_Models_Training

furkankurtoglu

Personal Bio

intestinal_crypt

Motility-Training-App

This is a PhysiCell repo for Motility Training App. It is for creating purposes and does not have xml2jupyter user interface

Notion_Widgets

This is the repo for my Notion Widgets

PCBiofilm

PhysiCell-Gurobi

This repo is created for FBA using Gurobi optimizer

PhysiCell-Kinetic_ODEs

This repo contains PhysiCell-libroadrunner related models.

PhysiCell-model-builder-FK

GUI application to build a PhysiCell model

PhysiCell_FK

This is Furkan's copy of PhysiCell repo: Scientist end users should use latest release! Developers please fork the development branch and submit PRs to the dev branch. Thanks!

PhysiCell_intracellular_FK

Demo Intracellular (SBML) models (using libRoadrunner) in PhysiCell.

simularium_test

Sol_Ext

SparseLearning-GNN

trsecretion

Tumor_Image_Processing

This is initiallized project for my Image Processing Project. However, it will be used in Hypoxia project to find some important measerements for parameter estimation, i.e. viable rim size, necrotic area.