fteufel

signalp-6.0

Multi-class signal peptide prediction and structure decoding model.

PyTorch-GRU-D

PyTorch Implementation of GRU-D from "Recurrent Neural Networks for Multivariate Time Series with Missing Values" https://arxiv.org/abs/1606.01865

alphafold-peptide-receptors

Identifying peptide-receptor interactions using AlphaFold-Multimer

DeepPeptide

Predicting cleaved peptides in protein sequences

hf-train-tpu

Train Huggingface LMs on google cloud TPUs.

SecretoGen

A conditional generative model for signal peptide design and efficiency prediction

marcha-local

VersusVirus Hackathon 2020

master-thesis

WIP repo for my thesis

CNP-TCN

Conditional Neural Process with a TCN as classifier

FLEXS

Fitness landscape exploration sandbox for biological sequence design.

fteufel.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

protein-awd-lstm

Protein LMs compatible with TAPE

BEE-BO

Batched Energy-Entropy Bayesian Optimization

BEND

Benchmarking DNA Language Models on Biologically Meaningful Tasks

GCC-Patch-1.0.2

Updated skeletons for Java, Javascript and Python, as well as new Readme files for each.

Google-Sheets-MC-Simulator

Google Apps Script utility to run MC simulations

MLOps-hackathon-okt2022

Helper functions for the hackathon organized by DDSA and @SkafteNicki on 19/10/2022

polaris

Foster the development of impactful AI models in drug discovery.

ppv

SCTransformPy

A python port of the R package SCTransform:

slip

SLIP is a sandbox environment for engineering protein sequences with synthetic fitness functions.

streamlit-signal-peptides

tape

Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.

transformers

🤗Transformers: State-of-the-art Natural Language Processing for Pytorch and TensorFlow 2.0.