Fritz Obermeyer's repositories
barrier-design-doc
Delayed Sampling with Funsors
apted
Python APTED algorithm for the Tree Edit Distance
beagle-lib
general purpose library for evaluating the likelihood of sequence evolution on trees
code_diff
Fast AST based code differencing in Python
effects-bibliography
A collaborative bibliography of work related to the theory and practice of computational effects
EpiGen-COVID19
Using both phylogenetic and time-series data from the COVID19 pandemic to estimate number of missing infections and predict forward epidemic trajectory.
opt_einsum
⚡️Optimizing numpy's einsum function with order optimization and GPU support.
opt_einsum_samples
Tensor network sample contractions in JSON format for testing opt_einsum
pyroed
Bayesian optimization of discrete sequences
pyrsistent
Persistent/Immutable/Functional data structures for Python
tspyro
Inferring geography, time (and maybe other stuff) with Pyro and tree sequences