friend1ws

nanomonsv

SV detection tool for nanopore sequence reads

pmsignature

R package for extracting mutation signatures from a list of somatic mutations

SAVNet

detection of mutations causing splicing change

iravnet

intron retention associated variant detection project

intron_retention_utils

script for extracting intron retention events

annot_utils

scripts processing annotation data from UCSC

fusion_utils

utility for comparing fusion results

sv_utils

package for analyzing GenomonSV results

fusion_db

Database for fusion gene

cancer_gene_db

Database for known cancer genes

centr_utils

utilities for centromere analysis

ggseqlogo

A lightweight package for generating sequence logos based on ggplot2

friend1ws.github.io

My website

alpha-CENTAURI

A python package from Pacific Biosciences to analyze centromeric sequences

alu_proj

chimera_utils

programs for processing chimeric reads generated at a STAR alignment step

Complete-Striped-Smith-Waterman-Library

github_action_test

hap_utils

Utilities for haplotype analysis

homocomp

homopolymer compression program by Rust

junc_utils

utility functions for analyzing splicing junction

local_polishing_test

Test script for Nanopore sequence local polishing

nanobreak

Break point detection from nanopore sequencing data

nonB_DB

Database for nonB database

onebreak

national cancer center break point

SF3B1_project

Scripts for SF3B1 project

simple_exp

simple script for calculating gene expression

umi_test

test scripts for umi_tools and STAR solo

UXM_deconv

workflow_test

Test repository for workflow test