freiburgermsu

ROSSpy

Reverse Osmosis Simulation Software

ChemW

A rigorous software for determining the molecular weight of minerals, chemicals, and peptides

BiGG_SABIO

A module to acquire reaction kinetics data from SABIO-RK for any BiGG model

ModelSEEDpy

Python package for building and analyzing models using ModelSEED

opentecr

openTECR database curation

PDIpy

A software that simulates photodynamic inactivation of a coccus bacterium

PHREEQC

PHREEQC simulation code for RO desalination fluidics

dGPredictor

ProjectNotebooks

Repository for Jupyter notebooks and associated data for various research projects of the ModelSEED team

ANME

cobrakbase

KBase Interface for COBRApy

cobrapy

COBRApy is a package for constraint-based modeling of metabolic networks.

codons

A Python module that translates DNA and RNA nucleotide sequences into the sequences of the encodes set of proteins.

CommPhitting

CommScores

cv

dFBApy

A Dynamic Flux Balance Analysis package for computational biology

hillfit

Fitting the Hill Equation to Experimental Data

MASc_thesis

MetabolicMC_Supplementary_Git_v1

Code, examples, and publication details for the application of Molecular Communications to cellular metabolism

microbial_interactions

ModelSEEDDatabase

This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno approach

MutualInformationAnalysisModule

nmrglue

A module for working with NMR data in Python

organiclinks-v2

protein_structure_hackathon

Hackathon repo for 11/28-11/30

readthedocs_template

SciCompforChemists

Scientific Computing for Chemists text for teaching basic computing skills to chemistry students using Python, Jupyter notebooks, and the SciPy stack. This text makes use of a variety of packages including NumPy, SciPy, matplotlib, pandas, seaborn, NMRglue, SymPy, scikit-image, and scikit-learn.

watertap

The WaterTAP development repository

WCMpy

A Python package for Whole-Cell simulations