freeseek / score

Tools to work with GWAS-VCF summary statistics files

freeseek/score Issues

Too many open files in temp, could not read temp
Updated 7 days ago1
Warning: as option --src-fasta-ref is missing it is impossible to infer which allele is the reference allele
Updated 2 months ago3
liftover: should GT stay the same when strand is flipped?
Closed 2 months ago2
colheaders.tsv format
Updated 2 months ago6
Add Sample Overlap Correction for Metal
Updated 2 months ago2
Feature request: Add INFO about cause of rejection in reject VCF
Updated a month ago7
Single out of range variant causes program to exit
Closed 3 months ago2
Liftover should probably sort output VCF
Updated 3 months ago2
insertion became deletion after liftover
Updated 4 months ago1
Liftover drop-tags finds no matching tags
Updated 4 months ago7
Error liftover.so: invalid option -- 's': using liftover for assigning coordinates and annotation to vcf
Updated 4 months ago3
integration as default bcftools plugins
Updated 3 months ago10
Systematic IFFY tag when indels are not trimmed
Updated 5 months ago4
clang 16 compatibility
Closed 10 months ago1
Assertion error for some variants with irregular GT value
Closed 10 months ago2