fredhutch.io

r_intro

four class intro to R: basic syntax, data manipulation, data viz

ml-pancancer-example

fredhutch.io

computational training at Fred Hutch

tfcb_2019

class materials for MCB517A through UW/Fred Hutch

python_intro

four class intro to python: basic syntax, data manipulation, data viz

git_github_intro

three class intro to git: git workflow in desktop app, GitHub, command line git

coding_for_cancer

An introduction to computational thinking and performing biomedical research with R for high school students

tfcb_2020

Class materials for MCB536 through UW/Fred Hutch

concepts_machine_learning

four class introduction to machine learning principles

practice-machine-learning

suggestions to practice machine learning for biomedical applications

python_programming

four class series on programming in python: for loops, conditional statements, functions, debugging

scRNAseq

UNDER CONSTRUCTION: training material for single cell RNAseq analysis

instructors

Information and links for fredhutch.io instructors

ml-melanoma-example

practice-covid-19

data analysis suggestions to practice reproducible computational methods for COVID-19 data

python_machine_learning

fredhutch.io's four-class overview of machine learning methods and applications

curriculum_contribution

guidelines for contributing to fredhutch.io courses

.github

2019-01-22-fredhutch

website for January 22, 2019 Fred Hutch Software Carpentry workshop

course_template

file structure and outlines for course materials

data_for_data_science

UNDER REVISION four class intro to data management: spreadsheets, project organization, metadata, reproducibility

example_analysis_repo

example data analysis with git history for intro to git and github

genomics

UNDER CONSTRUCTION: training material drafts for genomics data, analysis, and workflows

guacamole

example repository for Introduction to Git and GitHub

hpc_on_premise

fredhutch.io's overview of on-premise HPC resources for research computing

python_intro_hdc

four week intro to python: basic syntax, data manipulation, data viz, machine learning

r_machine_learning

UNDER CONSTRUCTION: four class series on machine learning in R

rnaseq

UNDER CONSTRUCTION: concepts and skills related to RNAseq analyses

tfcb_capstone

unix_shell_intro

UNDER CONSTRUCTION: four class introduction to the unix command line, including shell scripting and using HPC resources