frankier / csc-tricks

Tricks and configs for CSC (national HPC service Finland)

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csc-tricks

Tricks and configs for CSC (national HPC service Finland)

Fixing singularity pull

The directory fix_singularity_pull contains scripts which can be placed in a directory at the beginning of your $PATH e.g. ~/bin. Running singularity_pull will run a Singularity pull on an interactive node.

...and fixing mksquashfs too!

It also contains a way to configure mksquashfs. However, you should start by downloading and compiling a newer version of mksquashfs, since the version on CSC is old, and many optimisations have been made since:

$ git clone --depth 1 https://github.com/plougher/squashfs-tools.git

You can then build it like so:

$ cd squashfs-tools/squashfs-tools && make

If you are not using CSC, you might like to modify ~/bin/mksquashfs to request the amount of resources available on the node you are pulling on.

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Tricks and configs for CSC (national HPC service Finland)

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