perfplot extends Python's timeit by testing snippets with input parameters (e.g., the size of an array) and plotting the results. (By default, perfplot asserts the equality of the output of all snippets, too.)
For example, to compare different NumPy array concatenation methods, the script
import numpy
import perfplot
perfplot.show(
setup=lambda n: numpy.random.rand(n), # or simply setup=numpy.random.rand
kernels=[
lambda a: numpy.c_[a, a],
lambda a: numpy.stack([a, a]).T,
lambda a: numpy.vstack([a, a]).T,
lambda a: numpy.column_stack([a, a]),
lambda a: numpy.concatenate([a[:, None], a[:, None]], axis=1),
],
labels=["c_", "stack", "vstack", "column_stack", "concat"],
n_range=[2 ** k for k in range(15)],
xlabel="len(a)",
# logx=False,
# logy=False,
# More optional arguments with their default values:
# title=None,
# logx="auto", # set to True or False to force scaling
# logy="auto",
# equality_check=numpy.allclose, # set to None to disable "correctness" assertion
# colors=None,
# target_time_per_measurement=1.0,
# time_unit="s", # set to one of ("auto", "s", "ms", "us", or "ns") to force plot units
# relative_to=1, # plot the timings relative to one of the measurements
# flops=lambda n: 3*n, # FLOPS plots
)produces
 |
 |
|---|
Clearly, stack and vstack are the best options for large arrays.
Benchmarking and plotting can be separated, too. This allows multiple plots of the same data, for example:
out = perfplot.bench(
# same arguments as above
)
out.show()
out.save("perf.png", transparent=True, bbox_inches="tight")Other examples:
- Making a flat list out of list of lists in Python
- Most efficient way to map function over numpy array
- numpy: most efficient frequency counts for unique values in an array
- Most efficient way to reverse a numpy array
- How to add an extra column to an numpy array
- Initializing numpy matrix to something other than zero or one
perfplot is available from the Python Package Index, so simply do
pip install perfplot
to install or upgrade.
To run the perfplot unit tests, check out this repository and type
pytest
This software is published under the GPLv3 license.