13 - 18 October 2019 - Leysin, Switzerland
13.10.2019 - 18.10.2019
Hotel Central Residence & Spa, Leysin, Switzerland.
Arrival: Sunday before 18h
Departure: Friday around 14h30
For the full schedule, please go to: Schedule
- ≈17-18h: arrival of the participants, check-in
- Welcome and dinner
- Introductory lecture (Vincent Gardeux)
- Quantification, QC & Normalization (Davide Risso)
- Dimensionality reduction (Paulo Czarnewski)
- Batch correction (Panagiotis Papasaikas)
- Clustering - methods overview (Charlotte Soneson)
- Cell fate mapping and trajectories (Wouter Saelens)
- Differential expression (Charlotte Soneson)
- Afternoon: Team activity
- Evening: Keynote lecture: Alejandro Sifrim, Laboratory of Reproductive Genomics, KU Leuwen, Belgium.
- Transcriptome + proteome (Johan Reimegård)
- Differential abundance and differential state analysis of single cell cytometry data (Mark Robinson & Helena Crowell)
- Data integration methods (Sebastien Smallwood)
- Spatial mapping of scRNAseq (Lars Borm)
- Lineage tracing and scRNA (Maria Florescu)
After this course you will be able to:
- use a range of bioinformatics tools to analyze single cell RNA-seq data
- discuss a variety of aspects of single cell RNA-seq data analysis
- understand the advantages and limitations of single cell RNA-seq data analysis
- Alejandro Sifrim, Laboratory of Reproductive Genomics, KU Leuwen, Belgium
- Åsa Björklund, NBIS, Uppsala University, SciLifeLab, Uppsala, Sweden
- Charlotte Soneson, Computational Biology Group, Friedrich Miescher Institute for Biomedical Research / SIB, Basel, Switzerland
- Davide Risso, Department of Statistical Sciences, University of Padova, Italy
- Helena Crowell, Statistical Genomics, University of Zurich / SIB, Zurich, Switzerland
- Johan Reimegård, NBIS, Uppsala University, SciLifeLab, Uppsala, Sweden
- Lars Borm, Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden
- Maria Florescu, Hubrecht Institute, Developmental Biology and Stem Cell Research, Utrecht, Netherlands
- Mark Robinson, Statistical Genomics, University of Zurich / SIB, Zurich, Switzerland
- Nadine Zangger, Bioinformatics Core Facility, SIB, Lausanne, Switzerland
- Panagiotis Papasaikas, Computational Biology Group, Friedrich Miescher Institute for Biomedical Research / SIB, Basel, Switzerland
- Paulo Czarnewski, NBIS, Stockholm University, SciLifeLab, Stockholm, Sweden
- Sebastien Smallwood, Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland
- Vincent Gardeux, Laboratory of Systems and Genetics, EPFL / SIB, Lausanne, Switzerland
- Wouter Saelens, VIB-UGent Center for Inflammation Research, Gent, Belgium
Additional information
Coordination: Björn Nystedt (NBIS/SciLifeLab), Grégoire Rossier (SIB).
Scientific Committe: Åsa Björklund (NBIS/SciLifeLab), Michael Stadler & Charlotte Soneson (SIB and FMI Basel), Vincent Gardeux (EPFL).
For more information, please contact Grégoire Rossier.