francescopatane96

DeepFRI

Deep functional residue identification

nerve_data

Hidden_Markov_Models

Hidden markov models implementation tutorials

Distributed_drug_discovery_project

The scope of the project is to create a public and easy to access repository containing a vast coort of similarity-based drug discovery models.

ThermoNet

ThermoNet is a computational framework for quantitative prediction of the impact of single-point mutations on protein thermodynamic stability. The core algorithm of ThermoNet is an ensemble of deep 3D convolutional neural networks.

Bioactivity-prediction-with-ML

Create a bioactivity prediction model using molecular descriptors (PADEL) and supervised machine learning (ML).

Bioinformatics-tools

simple bioinfomatics tools

Molecular-dynamics-with-NAMD

Perform molecular dynamics experiments (MD) with NAMD on colab

fasta-reader-proteins

An easy fragment of code to read in fasta format files

tmhmm.py

A transmembrane helix finder in Python 3 modified to better adapt with NERVE and eNERVE environment

iFeature

iFeature is a comprehensive Python-based toolkit for generating various numerical feature representation schemes from protein or peptide sequences. iFeature is capable of calculating and extracting a wide spectrum of 18 major sequence encoding schemes that encompass 53 different types of feature descriptors. Furthermore, iFeature also integrates fi

biofx_python

Code for Mastering Python for Bioinformatics (O'Reilly, 2021, ISBN 9781098100889)