Francesco Battaglia's repositories
Kalman-and-Bayesian-Filters-in-Python
Kalman Filter book using Jupyter Notebook. Focuses on building intuition and experience, not formal proofs. Includes Kalman filters,extended Kalman filters, unscented Kalman filters, particle filters, and more. All exercises include solutions.
spike_preprocess
old preprocess pipeline
CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
cookiecutter-data-science
A logical, reasonably standardized, but flexible project structure for doing and sharing data science work. Here adapted for neuroscience data analysis
DeepLabCut
Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals
dotfiles
:wrench: .files, including ~/.macos — sensible hacker defaults for macOS
fastbook
Draft of the fastai book
jupyterlab_templates
Support for jupyter notebook templates in jupyterlab
KalmanPP2
Code for Psychophysics2 course
meet
Modular EEg Toolkit - MEET
MemDynStats
Statistics add-ons for neural data analysis
mne-python
MNE : Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python
na_assignments
Neuro-Analysis assignments from Haoze Zhu (s1091093)
Neural-Analysis
Everything for the course NWI-NM120
Neuranal
NeuroAnalysis Assignments
Neuro-Analysis-4
Repository for the course Neuro-Analysis
neuronaldynamics-exercises
Python exercises accompanying the book "Neuronal Dynamics"
plugin-GUI
Software for processing, recording, and visualizing multichannel electrophysiology data
pypylon
The official python wrapper for the pylon Camera Software Suite