Peter Clarke's repositories
udlbook
Understanding Deep Learning - Simon J.D. Prince
LLM-Blender
[ACL2023] We introduce LLM-Blender, an innovative ensembling framework to attain consistently superior performance by leveraging the diverse strengths of multiple open-source LLMs. LLM-Blender cut the weaknesses through ranking and integrate the strengths through fusing generation to enhance the capability of LLMs.
bio-transformers
bio-transformers is a wrapper on top of the ESM/Protbert model, trained on millions on proteins and used to predict embeddings.
pytorch-template
PyTorch deep learning projects made easy.
metagenome
Nextflow pipeline to analyse metagenome data
gfatools
Tools for manipulating sequence graphs in the GFA and rGFA formats
nextflow
A DSL for data-driven computational pipelines
bioconductor_docker
Docker Containers for Bioconductor - NEW!
einops
Deep learning operations reinvented (for pytorch, tensorflow, jax and others)
distil
An analytic workbench for user-guided development of model pipelines
distil-compute
Shared code for defining, running and parsing the results of D3M pipelines
kruda.js
Fast Data Pipeline in the browser.
distil-ingest
Elastic search and Postgres ingest for D3M program datasets
distil-pipeline-runner
Command line tool and dockerized server for running D3M primitive pipelines
mariadb-columnstore-docker
Simple docker setup for Single Server MariaDB ColumnStore
distil-dev-es
Creates a docker image for Distil development that contains ElasticSearch v5 and test data
distil-dev-postgres
Creates a docker image for Distil development that contains Postgres and test data
distil-build
Distil build environment
distil-pipeline-server
Stub server for testing TA2 integration
distil-timeseries-loader
A glue primitive for loading time series data from a D3M dataset into a Pandas Dataframe.
distil-vector-to-cols
D3M primitive for converting a single vector column into multiple named scalar columns
distil-fuzzy-join
D3M primitive for debugging data augmentation functionality
distil-mi-ranking
D3M primitive that ranks features relative to a selected target using pairwise mutual information scoring
lumo
A high performance WebGL tile rendering library
lumo-example
Example application showing some lumo features
veldt-examples
Example projects using Veldt
BigDataParser
Big data in the browser experiment
veldt-api
HTTP and WebSocket endpoints for veldt applications