forestrywhale

pymol-open-source

Open-source foundation of the user-sponsored PyMOL molecular visualization system.

funkyheatmap

Visualising data frames as funky heatmaps 📊

workshop-july-2022

Deep Modeling for Molecular Simulation, two-day virtual workshop, July 7-8, 2022

kmeans1d

A Python package for optimal 1D k-means clustering.

alphafold

Open source code for AlphaFold.

btrack

Bayesian multi-object tracking

CurvatureVisualize

Measures the shape properties of the object boundaries and displays the curvature.

toytree

A minimalist tree plotting library using toyplot graphs

PlotNeuralNet

Latex code for making neural networks diagrams

FCN-keras

Implementation of the paper "Fully Convolutional Network for Semantic Segmentation" with keras

M-TRACK

image-segmentation-keras

Implementation of Segnet, FCN, UNet , PSPNet and other models in Keras.

iPERCore

Liquid Warping GAN with Attention: A Unified Framework for Human Image Synthesis

IntegrativeVAEs

Variational autoencoders for cancer data integration

sort-google-scholar

Sorting Google Scholar search results based on the number of citations

sort-google-scholar

Sorting Google Scholar search results based on the number of citations

aics-ml-segmentation

AICS ML Segmentation (One-Way) Mirror

aics-segmentation

AICS Segmentation (One-Way) Mirror

scvelo

RNA Velocity generalized through dynamical modeling

dynamo-tutorials

Tutorials on using latest dynamo package

novosparc

wandb

🔥 A tool for visualizing and tracking your machine learning experiments. This repo contains the CLI and Python API.

dynamo-release

Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses

samplemod

COPASI

COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.

cobrapy

COBRApy is a package for constraint-based modeling of metabolic networks.

bigg_models

The BiGG Models website server

escher

Build, share, and embed visualizations of metabolic pathways.

cameo

cameo - computer aided metabolic engineering & optimization

TrustScience

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