Folkehelseinstituttet

Fhi.Smittestopp.App

Smittestopp 2 mobile application

Fhi.Smittestopp.Backend

Smittestopp 2 backend application

surveillance_data

Last date of data delivery: 2022-11-14. Regularly updated Norwegian covid-19 data from Folkehelseinstituttet (the Norwegian Institute of Public Health)

Fhi.Smittestopp.Documentation

Documentation for Smittestopp 2

Fhi.Smittestopp.Verification

mobagen

Documentation for MoBa Genetics data release

Fhi.Koronasertifikat.Verifikasjon.App

SARS-CoV-2_phylogeo

Phylogeographical analyses of SARS-CoV-2 variants of concern in Norway

fhi.helseid.demo

Demo application for use of Fhi.HelseId, based on Angular frontend

Fhi.Koronasertifikat.Verifikasjon.Backend

Fhi.Lmr.Slv.AzureFunctions

SC2_util

Various utility scripts for analysis and handling of Sars-CoV-2 data at FHI

fhi-ncov-seq-pipelines

FHI pipelines for SARS-CoV-2 sequences generated with the ARTIC sequencing protocol

Fhi.Frontend.NgComponents

Haplotype_callers

municipdata

cytof

Data-Processing

Data processing scripts including data/metadata downloading from NCBI goes here.

DiscoveryDocker

Docker-based implementation of the Discover1.1 pipeline for bacterial characterization.

drat_old

This drat repo is deprecated.

Fhi.HelseId.Angular6

Fhi.HelseId.DemoNet6

Fhi.Koronasertifikat.EHN_business_rules

EHN Business rules for Fhi.Koronasertifikat applications

git

testing purposes only

GWAS

GWAS functionality

hcv_burden_paper_2020

niph_tb_pipeline

WGS pipeline for Mycobacterium tuberculosis at the Norwegian Institute of Public Health (NIPH)

realtime-regional-model

Code for the paper "A real-time regional model for COVID-19: probabilistic situational awareness and forecasting"

Vibrio-Project

The pipeline will be Tested and used for studying Vibrio Vulnificus initially. Later it can be forked to use it for other species as well.

Wastewater_SARS-CoV-2

SARS-CoV-2 wastewater surveillance