fmorgante

CMplot

📊 Circular and Rectangular Manhattan Plot

hibayes

:swimmer: Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies

gtexresults

Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic studies with multiple conditions."

gwaslab

A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/

gwasvcf

Reading, querying and writing GWAS summary data in VCF format

plink2R

Read PLINK BED/BIM/FAM files into R

MungeSumstats

Rapid standardisation and quality control of GWAS or QTL summary statistics

bigsnpr

R package for the analysis of massive SNP arrays.

mr.mash.alpha

R package implementing methods for multivariate multiple regression with adaptive shrinkage priors.

mvsusieR

A new model and algorithm for multivariate Bayesian variable selection regression.

bioworkflows

In-house computational biology workflows at Columbia Neurology

qgg

Statistical tools for Quantitative Genetic Analyses

gwasglue

Linking GWAS data to analytical tools in R

secretariat

Clemson CHG Research Computing

mtlasso

mr.ash

R package implementing methods for multiple regression with adaptive shrinkage priors ("mr.ash").

mr.ash.alpha

An R package implementing Mr.ASH method

susieR

R package for "sum of single effects" regression.

mashr

An R package for multivariate adaptive shrinkage.