FAIM's repositories
custom-prefect-result
Custom Prefect Result (CPR) enables task-run result caching in Prefect, while keeping the result data in any file-format e.g. tiff-file for image data or csv-file for tabular data.
fmi-ij2-plugins
A collection of ImageJ2 plugins for use with KNIME
napari-psf-analysis
A napari plugin to analysis point spread functions.
faim-prefect
Utility functions for workflows.
ipa-project-template
Copier template for image processing & analysis projects.
faim-huygens
Tools to interact with SVI Huygens from Python
n2v-tasks
A collection of tasks to use Noise2Void.
faim-fiji
Custom Fiji bundle for distribution via conda
faim-wako-searchfirst
Python scripts for the SearchFirst option in Wako Software Suite
faim_demo-project
Demo Project generated with the ipa-project-template.
fmi-knime-update-site
KNIME Extensions for Image Processing at the FMI Basel
fmi-trackmate-addons
Addons for TrackMate in ImageJ
metamorph-mda-parser
Light-weight parsing of Metamorph/VisiView Multi Dimensional Acquisition .nd files.
mobie-utils-python
Python tools for MoBIE
napari
napari: a fast, interactive, multi-dimensional image viewer for python
pixi-psf
Pixi project to run napari-psf-analysis
prefect
The easiest way to coordinate your dataflow
prefect-faim-huygens
Prefect workflows for SVI Huygens Core
prefect-n2v
Noise2Void Prefect workflows.
prefect-workflows
A collection of Prefect workflows.