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Federico López-Osorio (flopezo)

flopezo

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Company:Queen Mary University of London

Location:London, UK

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Federico López-Osorio's starred repositories

ohana

mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.

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FastQC

A quality control analysis tool for high throughput sequencing data

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clues

Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data

Language:PythonStargazers:25Issues:0Issues:0

BetaScan

Genome-wide scan for balancing selection using beta statistic

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iSAFE

Pinpoints the mutation favored by selection

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grafify

Easy grafs, ANOVAs and posthoc comparisons.

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syntenyPlotteR

R package to draw syntenic plots in 3 different styles

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plotgardener

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genomenote

This Nextflow DSL2 pipeline takes aligned HiC reads, creates contact maps and a table of statistics.

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gggenes

➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2

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ggblend

Support for blend modes in ggplot2

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dtrackr

An R library for managing and documenting dplyr data pipelines

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PGA_course_2022

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obsidian-smart-connections

Chat with your notes & see links to related content with AI embeddings. Use local models or 100+ via APIs like Claude, Gemini, ChatGPT & Llama 3

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row-oriented-workflows

Row-oriented workflows in R with the tidyverse

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polite

Be nice on the web

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flashpca

Fast Principal Component Analysis of Large-Scale Genome-Wide Data

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polyDFE

predicting DFE and alpha from polymorphism data

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pixi

Package management made easy

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SLiM

SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology. It is highly flexible, with a built-in scripting language, and has a cross-platform graphical modeling environment called SLiMgui.

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moments

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stdpopsim

A library of standard population genetic models

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slendr

Population genetic simulations in R 🌍

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r-polars

Polars R binding

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polars

Dataframes powered by a multithreaded, vectorized query engine, written in Rust

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GeneRax

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prog

Functional Programming

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lcwgs-guide-tutorial

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physalia-lcwgs

Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022

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lisa

:woman_artist: Color palettes from Color Lisa

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