flixpar / med-ts-llm

Medical Time Series Analysis with LLMs

MedTsLLM: Leveraging LLMs for Multimodal Medical Time Series Analysis

Our paper has been published at MLHC 2024! MedTsLLM: Leveraging LLMs for Multimodal Medical Time Series Analysis Nimeesha Chan, Felix Parker, William Bennett, Tianyi Wu, Mung Yao Jia, James Fackler, Kimia Ghobadi

Instructions

Run with:

python3 train.py configs/config_default.toml

Setup

Datasets

Create folder data/ and add any datasets. Code for dataset processing is coming soon!

Python Environment

Then run these commands to set up the correct environment:

python3 -m venv .venv
source .venv/bin/activate
pip install -r requirements.txt
pip install -r recommended.txt # optional but highly recommended