flamingofugang / TCIA_Notebooks

Notebooks for working with The Cancer Imaging Archive datasets

TCIA_Notebooks

This is a home for notebooks which demonstrate how to access and work with TCIA datasets.

General Notebooks

• TCIA_Linux_Data_Retriever_App.ipynb - A tutorial on how to install the NBIA Data Retriever command-line Data Retriever utility on Linux and use it to download TCIA datasets
• TCIA_REST_API_Queries_for_Public_Datasets.ipynb - A Python tutorial on how to use TCIA's REST API to query public datasets (no user account required)
• TCIA_REST_API_Downloads_for_Public_Datasets.ipynb - A Python tutorial on how to use TCIA's REST API to download public datasets (no user account required)
• TCIA_Series_UID_Report.ipynb - Ingests a TCIA manifest file and creates reports about what it contains

Collection-specific Notebooks

• ACNS0332.ipynb - A tutorial on accessing DICOM images, clinical data, and tumor annotations (3d segmentations & seed points) from the "Annotations for Chemotherapy and Radiation Therapy in Treating Young Patients With Newly Diagnosed, Previously Untreated, High-Risk Medulloblastoma/PNET (ACNS0332)" dataset hosted on TCIA