fjug

MoMA

MoMA - the MotherMachine Analyzer

BobSeg

DL-MBL-2021

Exercise repository for the DL@MBL 2021 Course

HelloWorldCommand

Learnathon 2018

IDDEA

ParaMaxFlow

tutorials

ImageJ programming examples

ZIBAmiraLocal

My local ZIBAmira stuff (just to share with myself)

.dotfiles

cgm-remote-monitor

nightscout web monitor

DL_TensorFlow_PyTorch

dotfiles

My configuration files.

ij-command-2

imagej-legacy

Backwards compatibility with ImageJ 1.x

ImageJ_Plugins

imglib

A generic next-generation Java library for image processing

IndagoLoggingWrapper

Logging for projects that run standalone and from within Fiji/ImageJ2

mmpreprocess

Standalone and fast preprocessing for MotherMachine datasets

MotherMachine

Bacteria tracking project

NordenTools

All the stuff I do to make the Norden-Lab happy...

opengm

A C++ Library for Discrete Graphical Models

sbmrm

Bundle Method for Risk Minimization for Structured Output

scijava-jupyter-kernel

Write SciJava scripts in Jupyter notebook!

sciview-tutorial

SciView tutorial for the 2018 DAIS hackathon

simplified-io

Read, write, type convert images using simple methods.

Stitching

Fiji's Stitching plugins reconstruct big images from tiled input images.

tensorflow

Computation using data flow graphs for scalable machine learning

training-material

A collection of Galaxy-related training material

TutorialBigDataViewer

BDV and Caching tutorial for the DAIS Learnathon 2017

TutorialClearVolume