fitzLab-AL / gdm

R package for Generalized Dissimilarity Modeling

fitzLab-AL/gdm Issues

Issue with long vectors
Updated a month ago3
Using terra() data objects with gdm ver v1.6.0 [e.g., for visualizing Multi-dimensional Biological patterns]
Closed a month ago8
Increasing the number of splines and knots reduces propability of model fitting
Closed 6 months ago3
Reproducing Plot 4a in Mokany et al (2022)
Closed 6 months ago5
Variable importance assessment (knots error)
Updated 6 months ago2
Installation error on Ubuntu 20.04 with R 4.1.3
Closed 7 months ago6
How can I obtain the unique identifiers of the sites that are being compared by the Bray-Curtis index using formatsitepair()
Closed 7 months ago
dimname error when predictor gets dropped in gdm.varImp
Closed 7 months ago1
Error running formatsitepair function
Closed a year ago2
Geographic distance calculated using Pythagorean theorem
Updated 2 years ago4
Possible bug in gdm.varImp
Closed 2 years ago6
Can you share a vignette of phylogenetic generalised dissimilarity model with gdm package?
Closed 2 years ago1
gdm.varimp error
Closed 2 years ago4
Custom weights - error incorrect number of dimensions
Closed 2 years ago3
predict error
Closed 2 years ago3
Error when running gdm.varImp()
Closed 2 years ago4
gdm.varImp() returns NA when using only one covariate
Closed 2 years ago1
gdm.VarImp failes if the sum of I-spline coefficients for the "Geographic" predictor == 0
Closed 2 years ago2
gdm.varImp sensitive to predictor names
Closed 2 years ago1
formatsiterepair undefined columns
Closed 3 years ago1
subsample argument in formatsitepair does not actually subsample sites
Closed 3 years ago
Non-default spline number breaks gdm.varImp()
Closed 3 years ago2
Consider forcing user to specify spline number
Closed 3 years ago1
Specifying non-equal spline numbers across variables breaks plot() and isplineExtract()
Closed 3 years ago2
plotUncertainty(): more documentation, custom plotting method
Closed 3 years ago1
Non-default splines argument breaks isplineExtract()
Closed 3 years ago1
Problem with gdm.varImp function
Closed 3 years ago1
Discussion: GDM assumption on increasing dissimilarity
Closed 3 years ago
GDM without Coordinates
Closed 3 years ago4
par(ask=TRUE) will improve plot.gdm
Closed 3 years ago1
error in formatsiterepair function 'aggregation function missing: defaulting to length'
Closed 3 years ago6
gdm.transform function error
Closed 3 years ago1
Issues with gdm.varImp()
Closed 3 years ago1
GDM not supported anymore by CRAN
Closed 3 years ago1
predData is necessary in formatsitepair, even though the help file states it is not
Closed 3 years ago1
There appears to be a typo in the chunk of code that determines species count for each site and then filters sites with few species. There should be a comma inside the braket after "bioData so the apply function does not return "dim(x) must have a positive length." I think this is how the line in question should read: sppTotals <- cbind(as.data.frame(zst[,"siteCol"]), apply(sppDat, 1, function(m){sum(as.numeric(m))})) . The formatsitepair function does not work for me and I think this is why.
Closed 3 years ago