Daniel Fischer's repositories
GenomicTools
This Package is the continuation of the genomic analysis tools part of the GeneticTools package
Lego-Sequencer
Lego-Sequencer project
Snakebite-GBS
Snakemake GBS-pipeline
Snakebite-miRNA
Snakemake miRNA pipeline
Snakebite-RNAseq
Standard RNA-seq pipeline
BovReg_eQTL
Repository
compare-sets
The program compares two sets of DNA sequences (provided as FASTA files) and returns the percent of sequences in each set that align to sequences in the other set. It also provides alignment information for each sequence.
craiyon.py
Unofficial API Wrapper for craiyon.com (DAL-E-MINI). Generate awesome images from text tokens.
DRAM
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
GenomicTools.fileHandler
Collection of the file handlers used in the GenomicTools package
GenomicTools.uniprot
Interaction with the uniprot webservice
holoruminant_mg_pipe
Genome-resolved metagenomics pipeline.
nextflow-bcl
A simple nextflow pipeline for Illumina run metrics (InterOp) and generation of fastq files (bcl2fastq)
Pipeline-WGS-VariantCalling
Snakemake pipeline for the 1kBulls required data processing
Snakebite-LabQC
A snakebite pipeline for incoming data qc
snakemake
This is the development home of the workflow management system Snakemake. For general information, see
transanno
accurate LiftOver tool for new genome assemblies
variant_liftover
A basic tool for lit over variant call files from one genome to another without need of liftover chain