Fred Hutch Data Science Lab's repositories
Choosing_Genomics_Tools
A course to help learners find resources and tools to help them process and interpret their genomic data
metricminer
R package that digs up data that matters from APIs, making it dashboard-ready
metricminer-dashboard
A template dashboard that helps you display your metricmined data in no time!
Using_Leanpub
A gentle introduction to Leanpub
AnVIL_Collection
đź“š An auto-generating collection of all materials related to the AnVIL and GDSCN projects
AnVILplot
Color Palette for AnVIL
anvilPoll2024
Analysis of the State of the AnVIL 2024 Poll
bench_to_bytes
A guide for wet bench researchers about why considering computational and data science skills can be useful for all types of scientific work.
Collaborative_Git_GitHub_Student_Practice
Practice space for DaSL students on Git branching and GitHub pull requests.
DaSEH
🌼 Collection of materials to accompany the R25 funded "Data Science for Environmental Health" short course
DaSL_Collection
đź“š An auto-generating library of all Data Science Lab Github-based content
Data_Management_and_Sharing
Data management and sharing best practices for biomedical data handling folks
Ethical_Data_Handling_for_Cancer_Research
This course is designed to help researchers and investigators understand the key principles of data management from an ethics, privacy, security, usability and discoverability perspective.
FH_Cluster_101
This course introduces users to the Fred Hutch Cluster. It will lead users through account creation, using the terminal, connecting to the cluster, submitting jobs, and transferring files. Available in both web and Leanpub formats.
fhdsl_Training_Kit
This resource is intended to provide guidance and assistance for creating online and in-person training materials.
GDSCN_BioDIGS_AMR
This activity guides students through an investigation of antimicrobial resistance in the BioDIGS samples using Galaxy.
GDSCN_BioDIGS_Book
Activities for using BioDIGS data in the classroom. This is the companion book to the BioDIGS project.
GDSCN_BioDIGS_Soil
This activity guides students through exploration of the soil characteristics data using R.
Intro_to_R
Introduction to R
ITN_course_search
A searchable table for ITN courses
posterpoller
opensource polling system for poster competitions or other things!
software_health_cheatsheets
Cheatsheets from the Best Practices in Software Metrics manuscript
WDL_Workflows_Guide
"Developing WDL Workflows" shows a bioinformatics workflow developer how to strategically develop and scale up a WDL workflow that is iterative, reproducible, and efficient in terms of time and resource used. This guide is flexible regardless of where the data is, what computing resources are being used, and what software is being used.